JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPA1_chr8_72016250_72080584	0/0	t0007	1832	12	1	4	3	1	3	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0008	1832	8	1	2	0	1	4	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0009	1831	7	5	2	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0010	1832	4	4	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0011	1832	4	3	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0012	1832	4	0	1	3	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0013	1835	4	4	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0014	1832	3	3	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0015	1832	3	3	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0016	1835	3	0	0	3	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0017	1832	2	2	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0018	1832	2	1	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0019	1832	2	2	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0020	1832	1	0	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0021	1832	1	0	0	0	0	1	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0022	1832	1	0	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0023	1832	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0024	1832	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0025	1832	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0026	1832	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0027	1832	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0028	1832	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0029	1832	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0030	1835	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0031	1835	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0032	1835	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0033	1831	1	0	1	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0034	1835	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0035	1831	1	1	0	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0036	1832	1	0	0	1	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPC1_chr3_142719034_142812888	1/1	t0001	2180	173	33	28	93	7	10	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0002	2180	50	10	6	27	0	7	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0003	2180	26	8	10	0	3	5	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0004	2180	22	0	0	20	0	2	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0005	2180	21	2	1	18	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0006	2180	20	15	2	1	0	2	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0007	2174	13	12	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0008	2180	7	7	0	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0009	2180	2	1	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0010	2180	1	1	0	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0011	2180	1	1	0	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0012	2180	1	0	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0013	2180	1	0	0	1	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0014	2180	1	0	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC1_chr3_142719034_142812888	0/0	t0015	2180	1	0	1	0	0	0	copy fasta	TRPC1	chr3	142719034	142812888
TRPC3_chr4_121869481_121957060	0/0	t0001	5633	39	0	9	23	2	5	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0002	5634	38	3	12	17	2	4	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0003	5635	26	2	6	15	0	3	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0004	5625	23	0	0	21	0	2	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0005	5633	19	1	7	11	0	0	copy fasta	TRPC3	chr4	121869481	121957060