JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPC3_chr4_121869481_121957060	0/0	t0006	5631	14	14	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/1	t0007	5636	12	2	6	2	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0008	5634	10	1	4	4	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0009	5625	9	9	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0010	5635	9	0	0	8	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0011	5632	8	7	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0012	5635	8	3	1	2	0	2	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0013	5633	5	0	0	5	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0014	5626	5	2	0	0	0	3	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0015	5631	4	1	3	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0016	5632	4	4	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0017	5624	4	4	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0018	5630	4	0	2	1	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0019	5634	3	3	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0020	5633	3	2	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0021	5632	3	3	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0022	5635	3	0	0	0	0	3	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0023	5634	3	0	0	3	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0024	5622	3	3	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0025	5637	3	3	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0026	5636	3	1	1	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	1/0	t0027	5636	3	0	0	1	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0028	5631	3	0	1	0	2	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0029	5635	3	0	0	3	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0030	5632	2	0	0	2	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0031	5634	2	2	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0032	5638	2	2	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0033	5635	2	0	2	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0034	5636	2	0	0	0	0	2	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0035	5635	2	2	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0036	5637	2	1	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0037	5638	2	0	2	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0038	5636	2	1	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0039	5634	2	0	0	2	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0040	5636	2	0	0	2	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0041	5623	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0042	5633	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0043	5632	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0044	5632	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0045	5637	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0046	5635	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0047	5625	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0048	5625	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0049	5623	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0050	5632	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0051	5625	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0052	5624	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0053	5625	1	0	0	0	0	1	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0054	5626	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0055	5632	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060