JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPC3_chr4_121869481_121957060	0/0	t0056	5633	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0057	5631	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0058	5634	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0059	5633	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0060	5633	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0061	5635	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0062	5634	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0063	5634	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0064	5635	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0065	5634	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0066	5633	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0067	5632	1	0	0	0	1	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0068	5633	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0069	5626	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0070	5635	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0071	5636	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0072	5637	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0073	5634	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0074	5635	1	0	0	0	1	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0075	5636	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0076	5635	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0077	5629	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0078	5637	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0079	5635	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0080	5623	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0081	5635	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0082	5637	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0083	5632	1	0	1	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0084	5634	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0085	5629	1	0	0	0	1	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0086	5636	1	0	0	1	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0087	5633	1	0	0	0	1	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC3_chr4_121869481_121957060	0/0	t0088	5634	1	1	0	0	0	0	copy fasta	TRPC3	chr4	121869481	121957060
TRPC4AP_chr20_34997404_35097807	1/0	t0001	769	149	56	24	46	5	17	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/1	t0002	769	108	5	27	60	4	11	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0003	769	55	17	7	22	3	6	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0004	769	9	9	0	0	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0005	770	7	7	0	0	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0006	769	2	2	0	0	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0007	769	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0008	769	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0009	769	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4AP_chr20_34997404_35097807	0/0	t0010	769	1	0	0	1	0	0	copy fasta	TRPC4AP	chr20	34997404	35097807
TRPC4_chr13_37627063_37874772	0/0	t0001	5045	34	3	1	25	0	5	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0002	5046	28	9	4	8	1	6	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0003	5045	22	1	2	17	0	2	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0004	5045	22	9	3	7	1	2	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0005	5046	22	10	3	2	1	6	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0006	5046	19	1	4	12	1	1	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0007	5046	17	9	4	3	0	1	copy fasta	TRPC4	chr13	37627063	37874772