JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPC4_chr13_37627063_37874772	0/0	t0008	5045	12	2	0	9	0	1	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0009	5046	11	6	2	2	0	1	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/1	t0010	5046	11	0	4	5	1	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0011	5046	9	3	4	1	1	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	1/0	t0012	5046	8	6	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0013	5058	7	0	0	4	1	2	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0014	5058	6	0	1	2	0	3	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0015	5046	4	3	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0016	5046	3	2	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0017	5057	3	2	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0018	5046	3	3	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0019	5046	3	3	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0020	5045	3	1	1	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0021	5046	2	2	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0022	5046	2	0	0	2	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0023	5046	2	2	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0024	5057	2	2	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0025	5045	2	0	0	0	1	1	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0026	5058	2	0	0	0	1	1	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0027	5046	2	2	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0028	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0029	5045	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0030	5045	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0031	5045	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0032	5045	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0033	5058	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0034	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0035	5046	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0036	5046	1	0	0	0	0	1	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0037	5046	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0038	5046	1	0	0	0	0	1	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0039	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0040	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0041	5046	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0042	5046	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0043	5045	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0044	5045	1	0	1	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0045	5046	1	0	0	1	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0046	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0047	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0048	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0049	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0050	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0051	5046	1	1	0	0	0	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC4_chr13_37627063_37874772	0/0	t0052	5046	1	0	0	0	1	0	copy fasta	TRPC4	chr13	37627063	37874772
TRPC5OS_chrX_111871181_111908990	1/0	t0001	2444	214	42	44	94	6	27	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0002	2444	15	14	1	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0003	2444	6	6	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/1	t0004	2444	3	1	1	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0005	2444	2	2	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990