JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPC5OS_chrX_111871181_111908990	0/0	t0006	2444	1	0	0	1	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0007	2444	1	0	1	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0008	2444	1	0	0	0	0	1	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0009	2440	1	1	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0010	2444	1	0	0	0	1	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0011	2444	1	1	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0012	2444	1	1	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0013	2444	1	1	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5OS_chrX_111871181_111908990	0/0	t0014	2444	1	1	0	0	0	0	copy fasta	TRPC5OS	chrX	111871181	111908990
TRPC5_chrX_111763011_112087776	1/0	t0001	9222	84	0	14	51	4	14	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0002	9218	10	10	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0003	9222	7	7	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0004	9222	4	4	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0005	9222	4	3	1	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0006	9222	4	4	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/1	t0007	9223	4	0	1	1	0	1	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0008	9222	4	0	0	4	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0009	9222	3	2	1	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0010	9219	2	2	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0011	9218	2	2	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0012	9220	2	1	1	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0013	9222	2	2	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0014	9223	2	2	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0015	9224	1	0	0	0	1	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0016	9224	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0017	9222	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0018	9219	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0019	9222	1	0	1	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0020	9223	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0021	9223	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0022	9220	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0023	9218	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0024	9222	1	0	0	1	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0025	9223	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0026	9222	1	0	1	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0027	9222	1	0	0	0	0	1	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0028	9223	1	0	0	1	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0029	9222	1	0	0	1	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0030	9221	1	0	0	1	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0031	9222	1	0	0	1	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0032	9222	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0033	9222	1	0	0	1	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0034	9223	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0035	9216	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0036	9219	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0037	9218	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0038	9222	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0039	9220	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0040	9218	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776
TRPC5_chrX_111763011_112087776	0/0	t0041	9220	1	1	0	0	0	0	copy fasta	TRPC5	chrX	111763011	112087776