Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTN2A2_chr6_26378108_26399874	0/0	t0024	2012	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0025	2012	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN3A1_chr6_26397275_26420208	1/1	t0001	1847	176	18	33	98	6	19	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0002	1849	67	46	5	14	0	2	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0003	1847	43	1	5	30	1	6	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0004	1834	38	9	15	2	1	11	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0005	1847	13	2	6	2	3	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0006	1847	11	0	0	11	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0007	1847	5	0	0	5	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0008	1849	4	4	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0009	1834	4	0	2	0	0	2	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0010	1834	4	0	4	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0011	1847	3	0	0	0	0	3	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0012	1834	3	3	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0013	1835	3	3	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0014	1847	2	0	2	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0015	1847	2	0	0	2	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0016	1847	2	0	1	0	1	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0017	1848	2	1	1	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0018	1848	2	2	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0019	1849	2	0	2	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0020	1847	1	0	0	0	0	1	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0021	1835	1	0	1	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0022	1847	1	0	0	0	0	1	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0023	1847	1	1	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0024	1849	1	1	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0025	1847	1	0	0	0	0	1	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0026	1849	1	1	0	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	t0027	1849	1	0	1	0	0	0	copy fasta	BTN3A1	chr6	26397275	26420208
BTN3A2_chr6_26360198_26383312	1/1	t0001	2772	170	37	32	74	7	18	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0002	2779	37	11	11	2	1	12	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0003	2775	34	2	4	21	1	6	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0004	2772	22	10	0	12	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0005	2778	13	0	0	13	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0006	2778	11	3	3	5	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0007	2772	9	0	1	1	3	4	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0008	2772	7	0	3	3	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0009	2778	6	4	1	0	1	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0010	2773	5	1	1	3	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0011	2773	5	0	2	1	0	2	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0012	2772	5	1	4	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0013	2779	3	0	0	3	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0014	2777	3	0	1	2	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0015	2772	3	0	0	3	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0016	2772	3	0	0	3	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0017	2772	3	0	2	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0018	2773	3	2	1	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0019	2772	3	3	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0020	2772	3	3	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0021	2772	2	0	0	2	0	0	copy fasta	BTN3A2	chr6	26360198	26383312