JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPC6_chr11_101446564_101589007	0/1	t0001	1900	78	15	15	35	3	9	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0002	1900	63	27	7	20	1	8	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0003	1900	35	1	7	23	0	4	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0004	1900	14	7	5	0	0	2	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0005	1892	12	11	0	1	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0006	1900	12	5	5	0	1	1	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0007	1900	10	8	2	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0008	1900	8	1	0	2	3	2	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0009	1900	2	2	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0010	1900	2	0	0	2	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0011	1900	2	1	1	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0012	1900	2	2	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0013	1900	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0014	1900	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	1/0	t0015	1896	1	0	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0016	1900	1	0	1	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0017	1900	1	0	0	1	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0018	1900	1	0	0	0	0	1	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0019	1900	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0020	1900	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0021	1900	1	0	1	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0022	1900	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0023	1900	1	1	0	0	0	0	copy fasta	TRPC6	chr11	101446564	101589007
TRPC6_chr11_101446564_101589007	0/0	t0024	1892	1	0	0	0	0	1	copy fasta	TRPC6	chr11	101446564	101589007
TRPC7_chr5_136207745_136370545	1/1	t0001	982	183	51	29	69	10	22	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	t0002	982	63	20	12	27	2	2	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	t0003	979	3	0	1	2	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	t0004	982	3	0	0	3	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	t0005	982	2	2	0	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	t0006	982	2	0	0	0	2	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	t0007	982	1	1	0	0	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPC7_chr5_136207745_136370545	0/0	t0008	982	1	0	0	1	0	0	copy fasta	TRPC7	chr5	136207745	136370545
TRPM1_chr15_30996065_31106725	0/1	t0001	910	127	60	25	18	4	19	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0002	910	97	26	22	32	3	14	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0003	910	19	2	11	0	4	2	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0004	909	4	0	1	0	1	2	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0005	910	2	2	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0006	909	2	1	0	0	0	1	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0007	910	1	1	0	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0008	910	1	0	1	0	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0009	910	1	0	0	1	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM1_chr15_30996065_31106725	0/0	t0010	910	1	0	0	1	0	0	copy fasta	TRPM1	chr15	30996065	31106725
TRPM2_chr21_44348621_44447644	0/0	t0001	908	20	3	10	2	1	4	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	t0002	908	8	1	3	2	1	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	t0003	908	5	2	3	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	1/1	t0004	908	5	0	0	3	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	t0005	908	1	0	0	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	t0006	908	1	0	0	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	t0007	908	1	0	0	1	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	t0008	908	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644