JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPM2_chr21_44348621_44447644	0/0	t0009	908	1	0	0	0	0	1	copy fasta	TRPM2	chr21	44348621	44447644
TRPM2_chr21_44348621_44447644	0/0	t0010	908	1	1	0	0	0	0	copy fasta	TRPM2	chr21	44348621	44447644
TRPM3_chr9_70524060_71126621	0/0	t0001	7160	38	5	5	16	5	7	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0002	7160	19	10	2	1	1	5	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0003	7160	17	2	4	7	1	3	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0004	7163	12	1	1	9	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0005	7158	9	0	2	2	0	5	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0006	7160	7	0	1	6	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0007	7160	7	2	0	4	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0008	7160	6	1	2	0	2	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0009	7159	5	0	2	0	0	3	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0010	7161	5	5	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0011	7160	4	0	3	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0012	7160	4	0	1	1	1	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0013	7160	3	3	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0014	7160	3	0	0	3	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0015	7161	3	3	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0016	7160	3	0	0	3	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0017	7163	2	0	0	2	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0018	7162	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0019	7162	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0020	7161	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0021	7160	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0022	7160	2	0	2	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0023	7157	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0024	7160	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0025	7160	2	0	0	0	0	2	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0026	7160	2	0	1	0	1	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0027	7158	2	0	0	0	2	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0028	7158	2	1	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0029	7160	2	2	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0030	7160	2	0	0	2	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0031	7160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0032	7160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0033	7162	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0034	7161	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0035	7162	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0036	7161	1	0	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0037	7162	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0038	7163	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0039	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0040	7161	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0041	7163	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0042	7162	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0043	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0044	7160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0045	7162	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0046	7160	1	0	1	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0047	7160	1	0	0	0	0	1	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0048	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621