JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPM3_chr9_70524060_71126621	0/0	t0049	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0050	7158	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0051	7160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0052	7159	1	0	1	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0053	7160	1	0	1	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0054	7160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0055	7160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0056	7160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0057	7162	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0058	7162	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0059	7162	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0060	7160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0061	7160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0062	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0063	7160	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0064	7160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0065	7160	1	0	0	1	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0066	7160	1	0	1	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0067	7160	1	0	0	0	1	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0068	7163	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0069	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0070	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM3_chr9_70524060_71126621	0/0	t0071	7161	1	1	0	0	0	0	copy fasta	TRPM3	chr9	70524060	71126621
TRPM4_chr19_49152792_49216836	1/0	t0001	414	268	76	59	98	11	23	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/1	t0002	414	35	3	9	3	5	14	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	t0003	414	4	0	0	3	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	t0004	414	2	2	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	t0005	414	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	t0006	414	1	0	0	0	0	1	copy fasta	TRPM4	chr19	49152792	49216836
TRPM4_chr19_49152792_49216836	0/0	t0007	414	1	1	0	0	0	0	copy fasta	TRPM4	chr19	49152792	49216836
TRPM5_chr11_2399515_2449514	1/1	t0001	2192	186	25	38	85	13	23	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0002	2192	84	26	17	33	3	5	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0003	2192	48	1	8	37	0	2	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0004	2192	41	11	3	14	1	12	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0005	2192	7	6	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0006	2192	5	5	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0007	2180	5	5	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0008	2192	4	0	0	4	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0009	2192	4	0	3	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0010	2192	3	0	2	0	0	1	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0011	2192	3	0	2	0	1	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0012	2192	3	0	0	3	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0013	2192	2	0	0	0	0	2	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0014	2192	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0015	2192	2	0	2	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0016	2192	2	2	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0017	2192	2	0	0	2	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0018	2192	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0019	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0020	2192	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514