JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPM5_chr11_2399515_2449514	0/0	t0021	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0022	2192	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0023	2192	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0024	2192	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0025	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0026	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0027	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0028	2192	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0029	2192	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0030	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0031	2192	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0032	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0033	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0034	2180	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0035	2180	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0036	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0037	2192	1	0	1	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0038	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0039	2192	1	1	0	0	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM5_chr11_2399515_2449514	0/0	t0040	2192	1	0	0	1	0	0	copy fasta	TRPM5	chr11	2399515	2449514
TRPM6_chr9_74717495_74892921	0/1	t0001	2182	221	57	54	78	9	22	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	1/0	t0002	2184	17	2	1	8	2	3	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0003	2178	12	8	2	0	2	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0004	2183	11	2	0	8	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0005	2227	8	1	0	7	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0006	2180	4	4	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0007	2182	2	2	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0008	2182	1	0	0	0	1	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0009	2183	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0010	2182	1	0	0	0	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0011	2182	1	0	1	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0012	2182	1	0	0	0	0	1	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0013	2182	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0014	2182	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0015	2182	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0016	2182	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0017	2182	1	1	0	0	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM6_chr9_74717495_74892921	0/0	t0018	2225	1	0	0	1	0	0	copy fasta	TRPM6	chr9	74717495	74892921
TRPM7_chr15_50552158_50691797	0/0	t0001	4785	70	9	16	31	3	11	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0002	4771	43	1	10	26	3	3	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0003	4783	23	1	3	13	3	3	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0004	4785	18	9	1	7	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0005	4773	18	0	10	0	1	7	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0006	4771	14	0	0	14	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0007	4785	9	0	4	5	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0008	4784	8	0	0	8	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0009	4785	8	8	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0010	4784	7	7	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0011	4772	6	0	1	4	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0012	4782	6	0	0	6	0	0	copy fasta	TRPM7	chr15	50552158	50691797