JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPM7_chr15_50552158_50691797	0/0	t0013	4784	4	3	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0014	4776	4	2	2	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0015	4790	4	4	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0016	4772	4	0	0	4	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0017	4787	4	4	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0018	4790	4	4	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0019	4795	4	4	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0020	4786	4	0	0	3	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0021	4785	3	3	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0022	4783	3	3	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/1	t0023	4785	3	0	0	0	2	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0024	4785	3	3	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0025	4790	3	0	2	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0026	4790	3	0	1	1	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0027	4778	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0028	4775	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0029	4772	2	0	1	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0030	4772	2	0	0	2	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0031	4784	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0032	4787	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0033	4785	2	0	0	2	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0034	4780	2	1	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0035	4773	2	0	2	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0036	4785	2	2	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0037	4783	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0038	4783	1	0	0	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0039	4785	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0040	4777	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0041	4771	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0042	4772	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0043	4771	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0044	4771	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0045	4783	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0046	4784	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0047	4795	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0048	4794	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0049	4774	1	0	0	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0050	4776	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0051	4775	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0052	4775	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0053	4772	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0054	4789	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0055	4771	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0056	4782	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0057	4784	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0058	4784	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0059	4772	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0060	4789	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0061	4790	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0062	4796	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797