JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPM7_chr15_50552158_50691797	0/0	t0063	4786	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0064	4785	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0065	4773	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0066	4783	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0067	4784	1	0	0	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	1/0	t0068	4785	1	0	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0069	4786	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0070	4786	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0071	4786	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0072	4786	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0073	4787	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0074	4817	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0075	4785	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0076	4785	1	0	0	0	0	1	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0077	4786	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0078	4785	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0079	4785	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0080	4773	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0081	4773	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0082	4590	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0083	4771	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0084	4786	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0085	4794	1	1	0	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0086	4785	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0087	4795	1	0	0	1	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM7_chr15_50552158_50691797	0/0	t0088	4781	1	0	1	0	0	0	copy fasta	TRPM7	chr15	50552158	50691797
TRPM8_chr2_233912373_234024522	0/0	t0001	2344	56	9	5	31	3	8	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0002	2340	48	8	9	26	1	4	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	1/0	t0003	2332	38	6	7	10	5	9	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0004	2348	30	13	6	10	0	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0005	2345	29	4	16	7	0	2	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0006	2328	19	4	6	9	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0007	2352	16	12	2	0	1	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0008	2332	8	0	1	3	0	4	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0009	2344	6	0	0	6	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0010	2340	4	0	0	4	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0011	2328	4	0	0	4	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0012	2352	4	4	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0013	2336	4	1	0	3	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0014	2336	4	0	0	0	0	4	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0015	2348	4	4	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0016	2332	3	1	0	2	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0017	2348	3	1	0	2	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0018	2328	3	0	1	2	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0019	2332	3	3	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0020	2332	3	0	0	3	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0021	2332	2	0	0	1	0	1	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0022	2345	2	1	1	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0023	2344	2	0	2	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0024	2344	2	0	2	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522