JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPM8_chr2_233912373_234024522	0/0	t0025	2349	2	1	1	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0026	2328	2	2	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0027	2352	1	0	1	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0028	2332	1	0	1	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0029	2348	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0030	2344	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0031	2348	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0032	2332	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0033	2324	1	0	1	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0034	2332	1	0	1	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0035	2306	1	0	0	0	1	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0036	2332	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0037	2344	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0038	2340	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0039	2328	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/1	t0040	2348	1	0	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0041	2344	1	0	0	0	1	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0042	2340	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0043	2340	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0044	2344	1	1	0	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0045	2328	1	0	1	0	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0046	2328	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPM8_chr2_233912373_234024522	0/0	t0047	2328	1	0	0	1	0	0	copy fasta	TRPM8	chr2	233912373	234024522
TRPS1_chr8_115403496_115673975	0/0	t0001	6075	11	0	5	3	2	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0002	6085	11	2	2	4	0	3	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0003	6090	9	0	5	2	1	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0004	6085	9	1	1	5	1	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0005	6087	8	7	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0006	6084	7	0	4	2	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0007	6090	6	1	1	4	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/1	t0008	6080	5	0	1	0	1	2	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0009	6085	5	0	0	5	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0010	6091	4	2	2	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0011	6075	4	1	0	1	1	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0012	6093	4	4	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0013	6075	4	4	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0014	6090	4	3	0	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0015	6080	3	0	2	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0016	6086	3	0	0	3	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0017	6074	3	1	0	0	1	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0018	6085	3	0	0	3	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0019	6091	2	0	2	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0020	6080	2	0	0	0	2	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0021	6090	2	0	0	2	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0022	6091	2	0	1	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0023	6076	2	2	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0024	6074	2	0	0	0	0	2	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0025	6085	2	2	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0026	6075	2	1	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0027	6088	2	1	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975