JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPS1_chr8_115403496_115673975	0/0	t0028	6081	2	2	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0029	6079	2	2	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0030	6075	2	2	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0031	6078	2	1	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0032	6092	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0033	6082	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0034	6090	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0035	6089	1	0	0	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0036	6084	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0037	6082	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0038	6078	1	0	0	0	1	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0039	6080	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0040	6091	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0041	6083	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0042	6091	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0043	6081	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0044	6090	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0045	6082	1	0	0	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0046	6080	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	1/0	t0047	6080	1	0	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0048	6091	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0049	6090	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0050	6085	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0051	6084	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0052	6084	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0053	6085	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0054	6084	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0055	6074	1	0	0	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0056	6080	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0057	6085	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0058	6086	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0059	6084	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0060	6075	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0061	6075	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0062	6076	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0063	6084	1	0	0	0	1	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0064	6074	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0065	6084	1	0	0	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0066	6081	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0067	6081	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0068	6087	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0069	6091	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0070	6081	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0071	6094	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0072	6077	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0073	6086	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0074	6080	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0075	6077	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0076	6077	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0077	6081	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975