JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPS1_chr8_115403496_115673975	0/0	t0078	6080	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0079	6082	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0080	6082	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0081	6085	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0082	6080	1	0	0	0	0	1	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0083	6080	1	0	0	0	1	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0084	6082	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0085	6080	1	0	0	1	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0086	6088	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0087	6089	1	0	1	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0088	6083	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0089	6079	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0090	6079	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0091	6080	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0092	6093	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0093	6088	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPS1_chr8_115403496_115673975	0/0	t0094	6077	1	1	0	0	0	0	copy fasta	TRPS1	chr8	115403496	115673975
TRPT1_chr11_64218816_64231186	0/1	t0001	207	369	64	74	180	8	42	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	1/0	t0002	207	20	18	1	0	0	0	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	t0003	207	2	2	0	0	0	0	copy fasta	TRPT1	chr11	64218816	64231186
TRPT1_chr11_64218816_64231186	0/0	t0004	207	1	0	1	0	0	0	copy fasta	TRPT1	chr11	64218816	64231186
TRPV1_chr17_3560446_3614411	0/1	t0001	1641	74	0	14	52	1	6	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0002	1641	72	2	19	39	3	9	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0003	1645	50	1	13	21	2	13	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0004	1645	20	7	1	6	3	3	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0005	1641	18	1	1	10	1	5	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0006	1645	18	0	3	15	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0007	1647	17	14	2	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0008	1647	17	16	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0009	1647	11	2	0	7	0	2	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0010	1657	10	0	7	0	3	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0011	1643	7	5	2	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0012	1647	5	1	0	4	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0013	1634	5	0	0	5	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0014	1641	4	3	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0015	1657	4	0	3	0	1	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0016	1659	4	3	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0017	1641	3	1	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0018	1643	3	2	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0019	1643	3	0	2	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	1/0	t0020	1645	3	0	0	0	0	2	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0021	1647	3	2	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0022	1659	3	3	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0023	1641	2	0	2	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0024	1641	2	0	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0025	1641	2	0	0	2	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0026	1644	2	2	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0027	1642	2	0	0	1	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0028	1646	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0029	1649	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411