JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPV1_chr17_3560446_3614411	0/0	t0030	1649	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0031	1649	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0032	1635	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0033	1642	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0034	1638	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0035	1641	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0036	1641	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0037	1642	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0038	1643	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0039	1645	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0040	1645	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0041	1645	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0042	1645	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0043	1645	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0044	1645	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0045	1645	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0046	1647	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0047	1647	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0048	1648	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0049	1649	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0050	1649	1	0	0	0	0	1	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0051	1655	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0052	1658	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0053	1659	1	0	1	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0054	1659	1	1	0	0	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV1_chr17_3560446_3614411	0/0	t0055	1637	1	0	0	1	0	0	copy fasta	TRPV1	chr17	3560446	3614411
TRPV2_chr17_16410571_16442003	1/0	t0001	485	182	36	39	72	4	30	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/1	t0002	485	83	8	17	45	5	7	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0003	485	61	27	11	18	1	4	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0004	485	16	0	4	6	2	4	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0005	485	13	10	1	2	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0006	485	7	5	1	0	0	1	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0007	485	4	3	1	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0008	485	3	3	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0009	485	2	0	2	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0010	485	2	2	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0011	485	2	0	2	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0012	485	1	1	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0013	485	1	1	0	0	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV2_chr17_16410571_16442003	0/0	t0014	485	1	0	0	1	0	0	copy fasta	TRPV2	chr17	16410571	16442003
TRPV3_chr17_3505502_3562812	0/0	t0001	3554	152	12	26	96	1	17	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0002	3552	41	18	5	11	3	4	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0003	3552	32	4	2	25	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0004	3554	30	0	15	1	4	10	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/1	t0005	3554	30	5	12	0	5	7	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0006	3555	10	9	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0007	3554	9	0	0	9	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0008	3552	8	8	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0009	3551	8	0	0	8	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0010	3554	8	8	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812