Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACSS3_chr12_81073079_81266210	0/0	t0019	6331	1	0	0	0	0	1	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0020	6331	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0021	6331	1	0	0	0	1	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0022	6331	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0023	6331	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0024	6331	1	0	0	1	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0025	6331	1	0	1	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0026	6331	1	0	0	1	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0027	6323	1	0	0	1	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0028	6323	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0029	6323	1	0	0	0	1	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0030	6323	1	0	0	1	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0031	6331	1	0	0	0	0	1	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	t0032	6331	1	0	1	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACTA1_chr1_229426245_229439094	0/1	t0001	358	267	82	56	81	14	33	copy fasta	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	1/0	t0002	358	183	14	30	125	4	9	copy fasta	ACTA1	chr1	229426245	229439094
ACTA2_chr10_88930074_88957773	1/1	t0001	216	402	94	64	188	16	38	copy fasta	ACTA2	chr10	88930074	88957773
ACTBL2_chr5_57475018_57487811	1/1	t0001	1664	375	67	67	198	10	31	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0002	1664	30	1	11	1	7	10	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0003	1664	12	7	2	0	0	3	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0004	1664	10	10	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0005	1664	6	5	1	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0006	1664	3	3	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0007	1664	3	0	0	3	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0008	1664	2	0	0	2	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0009	1664	2	2	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0010	1664	2	0	1	0	1	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0011	1664	1	0	0	1	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0012	1664	1	0	0	1	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	t0013	1664	1	1	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTB_chr7_5522148_5535601	1/1	t0001	685	201	46	31	84	10	28	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0002	685	93	26	24	31	3	9	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0003	686	15	2	3	5	0	5	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0004	686	15	4	4	6	0	1	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0005	686	10	3	4	2	0	1	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0006	684	6	1	0	0	3	2	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0007	685	5	5	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0008	685	5	1	4	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0009	687	3	0	2	1	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0010	685	2	0	0	2	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0011	685	2	0	0	2	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0012	684	2	1	0	1	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0013	686	2	1	1	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0014	687	2	1	0	1	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0015	702	2	0	0	0	0	2	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0016	685	1	0	0	1	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0017	685	1	1	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0018	685	1	0	1	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0019	686	1	0	1	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	t0020	685	1	0	1	0	0	0	copy fasta	ACTB	chr7	5522148	5535601