Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTN3A2_chr6_26360198_26383312	0/0	t0022	2780	2	2	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0023	2779	2	2	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0024	2779	2	0	2	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0025	2778	2	0	2	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0026	2778	1	0	0	0	1	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0027	2779	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0028	2778	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0029	2773	1	0	1	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0030	2777	1	0	1	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0031	2777	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0032	2772	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0033	2772	1	0	1	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0034	2772	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0035	2772	1	0	0	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0036	2772	1	0	1	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0037	2772	1	0	0	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0038	2772	1	0	0	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0039	2762	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0040	2779	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0041	2779	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0042	2778	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0043	2778	1	0	1	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0044	2777	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0045	2777	1	0	0	0	0	1	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0046	2772	1	0	1	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0047	2772	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0048	2778	1	1	0	0	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	t0049	2775	1	0	0	1	0	0	copy fasta	BTN3A2	chr6	26360198	26383312
BTN3A3_chr6_26435504_26458415	1/1	t0001	1216	253	30	56	118	11	36	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0002	1216	44	39	2	1	0	2	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0003	1216	36	5	0	26	0	5	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0004	1216	19	0	5	11	3	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0005	1216	15	1	0	14	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0006	1216	5	3	2	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0007	1217	5	3	2	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0008	1217	5	4	1	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0009	1216	3	3	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0010	1216	3	0	0	3	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0011	1216	3	2	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0012	1216	3	0	0	2	0	1	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0013	1217	2	1	1	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0014	1216	2	1	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0015	1216	2	0	0	2	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0016	1217	1	1	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0017	1217	1	1	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0018	1216	1	1	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0019	1216	1	0	1	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0020	1216	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0021	1216	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0022	1216	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415