JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRPV3_chr17_3505502_3562812	0/0	t0011	3554	8	2	2	0	0	4	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0012	3554	7	0	6	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0013	3554	7	2	3	0	1	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0014	3554	7	1	5	0	1	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0015	3554	4	4	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0016	3554	4	4	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0017	3555	4	4	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	1/0	t0018	3555	4	3	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0019	3552	3	2	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0020	3554	3	0	0	3	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0021	3554	3	3	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0022	3552	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0023	3552	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0024	3552	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0025	3552	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0026	3552	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0027	3554	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0028	3554	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0029	3554	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0030	3554	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0031	3554	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0032	3554	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0033	3554	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0034	3554	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0035	3555	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0036	3554	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0037	3554	1	0	1	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0038	3554	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0039	3554	1	0	0	1	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0040	3554	1	0	0	0	0	1	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0041	3554	1	0	0	0	1	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0042	3555	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV3_chr17_3505502_3562812	0/0	t0043	3555	1	1	0	0	0	0	copy fasta	TRPV3	chr17	3505502	3562812
TRPV4_chr12_109778089_109838398	1/1	t0001	613	341	87	73	120	16	43	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	t0002	613	1	0	0	0	0	1	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	t0003	613	1	1	0	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV4_chr12_109778089_109838398	0/0	t0004	613	1	0	1	0	0	0	copy fasta	TRPV4	chr12	109778089	109838398
TRPV5_chr7_142903101_142938746	0/1	t0001	701	158	30	36	64	8	19	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0002	701	82	58	7	10	0	7	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0003	701	3	1	2	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0004	701	3	0	1	2	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0005	701	3	3	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0006	701	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0007	701	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0008	701	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV5_chr7_142903101_142938746	0/0	t0009	701	1	1	0	0	0	0	copy fasta	TRPV5	chr7	142903101	142938746
TRPV6_chr7_142866208_142890745	0/1	t0001	609	246	78	51	70	12	34	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	t0002	608	17	16	1	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	t0003	609	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745
TRPV6_chr7_142866208_142890745	0/0	t0004	609	1	1	0	0	0	0	copy fasta	TRPV6	chr7	142866208	142890745