JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRRAP_chr7_98873532_99018241	1/1	t0001	1054	133	19	22	66	6	18	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0002	1054	92	49	13	27	3	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0003	1054	11	0	0	11	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0004	1054	6	6	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0005	1053	5	5	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0006	1054	5	0	3	0	2	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0007	1054	3	0	2	0	1	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0008	1054	2	2	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0009	1054	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0010	1054	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0011	1054	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0012	1054	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRRAP_chr7_98873532_99018241	0/0	t0013	1054	1	1	0	0	0	0	copy fasta	TRRAP	chr7	98873532	99018241
TRUB1_chr10_114933195_114982676	1/0	t0001	2357	116	16	33	38	8	20	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0002	2376	37	32	5	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/1	t0003	2358	32	7	8	4	1	11	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0004	2359	11	5	2	0	2	2	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0005	2376	6	6	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0006	2375	5	5	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0007	2359	5	5	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0008	2359	3	3	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0009	2377	3	3	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0010	2359	3	0	2	0	1	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0011	2359	3	3	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0012	2376	2	2	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0013	2359	2	1	1	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0014	2357	2	0	0	0	0	2	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0015	2357	2	2	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0016	2358	2	0	0	2	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0017	2359	1	1	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0018	2358	1	0	0	0	0	1	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0019	2358	1	1	0	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB1_chr10_114933195_114982676	0/0	t0020	2357	1	0	1	0	0	0	copy fasta	TRUB1	chr10	114933195	114982676
TRUB2_chr9_128300159_128327447	1/1	t0001	4431	129	14	25	60	9	19	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0002	4434	48	0	3	40	1	4	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0003	4436	26	16	4	1	2	3	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0004	4435	20	0	0	18	0	2	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0005	4435	13	11	1	0	1	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0006	4435	11	11	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0007	4432	9	0	1	7	0	1	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0008	4431	9	0	1	8	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0009	4435	8	8	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0010	4431	6	0	5	0	0	1	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0011	4431	5	0	0	5	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0012	4430	5	0	1	4	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0013	4435	5	2	3	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0014	4434	4	0	0	4	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0015	4431	3	0	0	3	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0016	4434	3	0	0	3	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0017	4434	3	0	0	3	0	0	copy fasta	TRUB2	chr9	128300159	128327447