JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRUB2_chr9_128300159_128327447	0/0	t0018	4431	3	1	1	0	0	1	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0019	4436	3	3	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0020	4435	3	3	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0021	4431	2	0	0	0	0	2	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0022	4431	2	0	2	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0023	4431	2	0	0	2	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0024	4435	2	2	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0025	4436	2	2	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0026	4436	2	0	0	2	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0027	4434	2	0	0	2	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0028	4435	2	2	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0029	4432	2	0	0	2	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0030	4432	2	0	0	2	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0031	4431	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0032	4431	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0033	4431	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0034	4432	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0035	4429	1	0	0	0	0	1	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0036	4431	1	0	0	0	1	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0037	4431	1	0	0	0	0	1	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0038	4431	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0039	4431	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0040	4431	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0041	4431	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0042	4431	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0043	4431	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0044	4435	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0045	4436	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0046	4435	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0047	4436	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0048	4435	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0049	4434	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0050	4434	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0051	4435	1	0	0	0	0	1	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0052	4435	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0053	4436	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0054	4436	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0055	4435	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0056	4436	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0057	4437	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0058	4436	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0059	4436	1	0	1	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0060	4434	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0061	4435	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0062	4435	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0063	4436	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0064	4434	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0065	4435	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0066	4434	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0067	4433	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447