JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRUB2_chr9_128300159_128327447	0/0	t0068	4429	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0069	4435	1	1	0	0	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0070	4434	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0071	4430	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TRUB2_chr9_128300159_128327447	0/0	t0072	4430	1	0	0	1	0	0	copy fasta	TRUB2	chr9	128300159	128327447
TSACC_chr1_156333526_156351995	1/1	t0001	218	383	78	78	173	14	38	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	t0002	218	2	0	0	2	0	0	copy fasta	TSACC	chr1	156333526	156351995
TSACC_chr1_156333526_156351995	0/0	t0003	218	1	0	0	1	0	0	copy fasta	TSACC	chr1	156333526	156351995
TSBP1_chr6_32287698_32376903	0/0	t0001	481	160	47	25	67	5	16	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0002	481	71	11	13	44	2	1	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0003	481	39	2	3	24	0	10	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0004	481	33	24	5	0	3	1	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/1	t0005	481	27	0	7	14	2	3	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0006	481	24	0	11	8	1	4	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0007	481	22	0	0	21	0	1	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0008	481	19	2	5	5	0	7	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0009	481	12	0	0	11	0	1	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0010	481	7	1	3	1	2	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0011	481	3	1	0	1	1	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0012	481	3	3	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSBP1_chr6_32287698_32376903	0/0	t0013	481	1	1	0	0	0	0	copy fasta	TSBP1	chr6	32287698	32376903
TSC1_chr9_132886349_132949616	0/0	t0001	5103	97	6	25	55	2	9	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	1/0	t0002	5104	32	1	8	20	0	2	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0003	5104	20	3	0	15	2	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0004	5104	9	0	3	6	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0005	5104	7	5	2	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0006	5104	7	7	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0007	5105	7	7	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0008	5102	6	0	0	5	0	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0009	5104	6	0	1	5	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0010	5104	6	0	0	5	0	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0011	5104	5	4	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0012	5104	4	0	0	4	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0013	5104	4	3	0	0	1	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0014	5104	4	4	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0015	5105	3	3	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0016	5105	3	0	0	3	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0017	5103	3	0	1	0	1	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0018	5103	3	0	2	0	0	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0019	5104	3	3	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0020	5105	3	1	1	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0021	5104	3	0	0	3	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0022	5102	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0023	5103	2	0	1	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0024	5103	2	0	0	0	0	2	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0025	5103	2	0	0	2	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0026	5104	2	0	0	2	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0027	5104	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0028	5104	2	0	0	1	0	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0029	5103	2	2	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616