JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSC1_chr9_132886349_132949616	0/0	t0080	5103	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0081	5104	1	0	1	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0082	5105	1	0	1	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0083	5106	1	0	1	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/1	t0084	5104	1	0	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0085	5103	1	0	0	0	0	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0086	5104	1	0	0	0	0	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0087	5105	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0088	5104	1	0	1	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0089	5104	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0090	5106	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0091	5104	1	0	0	0	0	1	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0092	5104	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0093	5106	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0094	5104	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0095	5105	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0096	5104	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0097	5104	1	0	0	1	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0098	5105	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0099	5104	1	0	1	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC1_chr9_132886349_132949616	0/0	t0100	5106	1	1	0	0	0	0	copy fasta	TSC1	chr9	132886349	132949616
TSC22D1_chr13_44427143_44581330	1/0	t0001	2740	141	43	22	57	6	12	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/1	t0002	2741	61	6	20	25	2	7	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0003	2739	12	1	6	0	1	4	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0004	2739	4	4	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0005	2741	2	0	0	2	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0006	2739	2	1	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0007	2739	2	0	2	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0008	2740	2	2	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0009	2740	2	2	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0010	2741	1	0	0	1	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0011	2739	1	0	1	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0012	2740	1	1	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0013	2740	1	0	0	0	1	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0014	2740	1	0	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0015	2741	1	0	0	1	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0016	2740	1	0	0	1	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0017	2740	1	0	1	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0018	2739	1	1	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0019	2741	1	0	0	0	0	1	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0020	2741	1	0	0	1	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D1_chr13_44427143_44581330	0/0	t0021	2739	1	1	0	0	0	0	copy fasta	TSC22D1	chr13	44427143	44581330
TSC22D2_chr3_150403298_150471422	0/1	t0001	8831	52	0	6	42	0	3	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0002	8837	39	0	1	38	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	1/0	t0003	8840	25	0	10	7	3	4	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0004	8859	16	0	3	7	1	5	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0005	8842	13	4	4	0	1	4	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0006	8832	13	0	2	11	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0007	8840	10	2	3	3	1	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0008	8839	10	1	1	6	1	1	copy fasta	TSC22D2	chr3	150403298	150471422