JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSC22D2_chr3_150403298_150471422	0/0	t0059	8837	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0060	8831	1	0	0	0	1	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0061	8832	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0062	8832	1	0	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0063	8831	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0064	8830	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0065	8834	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0066	8842	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0067	8840	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0068	8840	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0069	8828	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0070	8844	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0071	8838	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0072	8841	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0073	8839	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0074	8838	1	0	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0075	8840	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0076	8839	1	0	0	0	1	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0077	8833	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0078	8840	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0079	8840	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0080	8844	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0081	8838	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0082	8842	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0083	8861	1	0	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0084	8837	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0085	8843	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0086	8846	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0087	8839	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0088	8841	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0089	8837	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0090	8843	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0091	8837	1	0	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0092	8838	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0093	8841	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0094	8836	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0095	8842	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0096	8837	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0097	8834	1	0	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0098	8838	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0099	8836	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0100	8838	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0101	8836	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0102	8842	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0103	8835	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0104	8831	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0105	8858	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0106	8859	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0107	8837	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0108	8841	1	0	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422