JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSC22D2_chr3_150403298_150471422	0/0	t0109	8835	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0110	8838	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0111	8841	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0112	8840	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0113	8836	1	0	0	0	0	1	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0114	8834	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0115	8838	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0116	8841	1	0	1	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0117	8840	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0118	8841	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0119	8838	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0120	8841	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0121	8838	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0122	8840	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0123	8837	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0124	8838	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0125	8837	1	0	0	1	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D2_chr3_150403298_150471422	0/0	t0126	8835	1	1	0	0	0	0	copy fasta	TSC22D2	chr3	150403298	150471422
TSC22D3_chrX_107708221_107780787	1/1	t0001	1667	205	69	31	77	9	17	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	t0002	1663	4	4	0	0	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	t0003	1667	2	0	1	0	0	1	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	t0004	1662	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	t0005	1667	1	1	0	0	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	t0006	1667	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	t0007	1665	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D3_chrX_107708221_107780787	0/0	t0008	1668	1	0	0	1	0	0	copy fasta	TSC22D3	chrX	107708221	107780787
TSC22D4_chr7_100461519_100484214	1/1	t0001	1131	326	64	58	154	9	39	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	t0002	1131	48	29	8	1	5	5	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	t0003	1131	1	0	0	0	0	1	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	t0004	1131	1	1	0	0	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	t0005	1131	1	0	0	0	0	1	copy fasta	TSC22D4	chr7	100461519	100484214
TSC22D4_chr7_100461519_100484214	0/0	t0006	1131	1	0	0	1	0	0	copy fasta	TSC22D4	chr7	100461519	100484214
TSC2_chr16_2042985_2094491	1/0	t0001	992	162	20	39	63	12	27	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/1	t0002	998	29	20	7	0	1	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0003	994	27	0	13	13	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0004	988	12	10	2	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0005	1000	11	9	2	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0006	998	9	9	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0007	992	8	0	3	0	1	4	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0008	986	7	0	1	0	0	6	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0009	986	6	0	3	0	1	2	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0010	992	5	4	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0011	994	4	3	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0012	992	4	4	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0013	996	3	0	0	3	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0014	990	3	3	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0015	994	3	0	0	2	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0016	990	2	1	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0017	994	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0018	1000	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491