JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSC2_chr16_2042985_2094491	0/0	t0019	980	1	0	0	0	0	1	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0020	992	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0021	992	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0022	992	1	0	0	1	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0023	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0024	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0025	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0026	990	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0027	990	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0028	986	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0029	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0030	1008	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0031	1006	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0032	1016	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0033	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0034	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0035	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0036	1002	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0037	992	1	1	0	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0038	992	1	0	0	0	1	0	copy fasta	TSC2	chr16	2042985	2094491
TSC2_chr16_2042985_2094491	0/0	t0039	990	1	0	1	0	0	0	copy fasta	TSC2	chr16	2042985	2094491
TSEN15_chr1_184046730_184079212	1/1	t0001	1392	380	70	66	186	17	39	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0002	1392	10	9	1	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0003	1392	7	2	3	0	1	1	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0004	1392	6	6	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0005	1392	3	1	2	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0006	1392	3	3	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0007	1392	3	0	0	3	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0008	1392	2	0	0	2	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0009	1392	2	0	0	2	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0010	1392	2	2	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0011	1392	1	1	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0012	1392	1	0	0	1	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0013	1392	1	1	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN15_chr1_184046730_184079212	0/0	t0014	1392	1	1	0	0	0	0	copy fasta	TSEN15	chr1	184046730	184079212
TSEN2_chr3_12479480_12538658	1/1	t0001	1356	93	9	18	40	7	17	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0002	1356	88	46	13	22	2	5	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0003	1356	31	8	13	3	4	3	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0004	1356	19	13	5	0	1	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0005	1356	13	6	2	1	1	3	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0006	1356	11	2	3	5	0	1	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0007	1356	8	0	6	2	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0008	1356	5	5	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0009	1356	4	0	0	1	0	3	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0010	1356	2	0	1	0	0	1	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0011	1356	2	0	2	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0012	1356	1	1	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0013	1356	1	1	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0014	1356	1	0	1	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0015	1356	1	0	1	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658