Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTN3A3_chr6_26435504_26458415	0/0	t0023	1216	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0024	1217	1	1	0	0	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	t0025	1216	1	0	0	1	0	0	copy fasta	BTN3A3	chr6	26435504	26458415
BTNL2_chr6_32388339_32412181	0/1	t0001	116	346	72	68	154	15	36	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	t0002	115	57	20	11	19	3	4	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	t0003	115	45	0	0	39	0	6	copy fasta	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	t0004	116	5	2	3	0	0	0	copy fasta	BTNL2	chr6	32388339	32412181
BTNL3_chr5_180983846_181011727	1/1	t0001	1039	143	43	21	49	5	23	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0002	1039	24	15	1	4	0	4	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0003	1039	20	0	5	5	1	9	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0004	1039	10	8	2	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0005	1039	4	1	1	0	0	2	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0006	1039	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0007	1039	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0008	1035	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0009	1035	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL3_chr5_180983846_181011727	0/0	t0010	1039	1	1	0	0	0	0	copy fasta	BTNL3	chr5	180983846	181011727
BTNL8_chr5_180894159_180955906	1/1	t0001	515	188	64	30	56	6	30	copy fasta	BTNL8	chr5	180894159	180955906
BTNL8_chr5_180894159_180955906	0/0	t0002	515	2	0	0	0	0	2	copy fasta	BTNL8	chr5	180894159	180955906
BTNL9_chr5_181035266_181066521	0/1	t0001	1855	163	17	32	80	7	26	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	1/0	t0002	1850	58	5	12	35	2	3	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0003	1850	56	2	18	29	5	2	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0004	1851	39	4	10	18	3	4	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0005	1854	22	7	2	10	0	3	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0006	1850	11	11	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0007	1855	9	0	0	4	0	5	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0008	1855	7	6	1	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0009	1851	4	0	4	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0010	1851	2	2	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0011	1854	2	2	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0012	1850	2	2	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0013	1854	2	0	0	0	0	2	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0014	1850	2	2	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0015	1855	2	1	0	0	1	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0016	1850	1	1	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0017	1850	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0018	1855	1	1	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0019	1855	1	0	1	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0020	1855	1	0	0	1	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0021	1872	1	0	1	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0022	1855	1	0	0	0	0	1	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0023	1855	1	1	0	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTNL9_chr5_181035266_181066521	0/0	t0024	1851	1	0	1	0	0	0	copy fasta	BTNL9	chr5	181035266	181066521
BTRC_chr10_101349165_101562313	0/0	t0001	4207	73	14	21	23	3	12	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	1/1	t0002	4207	58	3	19	24	5	5	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0003	4198	42	4	9	24	2	3	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0004	4198	41	20	2	10	2	7	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0005	4198	12	0	3	8	0	1	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0006	4207	10	7	3	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0007	4198	8	0	4	4	0	0	copy fasta	BTRC	chr10	101349165	101562313