JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSEN2_chr3_12479480_12538658	0/0	t0016	1356	1	0	0	0	1	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0017	1356	1	0	0	0	0	1	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0018	1356	1	1	0	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN2_chr3_12479480_12538658	0/0	t0019	1356	1	0	1	0	0	0	copy fasta	TSEN2	chr3	12479480	12538658
TSEN34_chr19_54186308_54199532	0/1	t0001	1228	120	22	30	40	10	17	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0002	1231	113	14	22	68	3	6	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0003	1231	60	22	19	11	2	6	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0004	1228	29	1	0	28	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0005	1231	28	16	2	9	1	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0006	1231	18	5	1	7	0	5	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0007	1228	9	1	6	0	0	2	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0008	1231	6	6	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0009	1231	5	0	0	5	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0010	1231	4	0	0	4	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0011	1231	3	3	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0012	1228	3	1	2	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0013	1228	3	0	0	3	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0014	1231	3	3	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0015	1232	3	0	1	1	0	1	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0016	1232	3	0	0	2	0	1	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0017	1231	2	0	1	0	0	1	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0018	1229	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0019	1228	1	1	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0020	1231	1	1	0	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0021	1231	1	0	0	0	0	1	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0022	1229	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0023	1232	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0024	1229	1	0	1	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0025	1228	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0026	1228	1	0	1	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0027	1228	1	0	0	0	0	1	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0028	1228	1	0	0	0	0	1	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0029	1232	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0030	1232	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0031	1228	1	0	1	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0032	1228	1	0	1	0	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0033	1231	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0034	1231	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0035	1231	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN34_chr19_54186308_54199532	0/0	t0036	1232	1	0	0	1	0	0	copy fasta	TSEN34	chr19	54186308	54199532
TSEN54_chr17_75511528_75529735	1/1	t0001	357	417	86	81	180	18	50	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	t0002	357	4	3	1	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSEN54_chr17_75511528_75529735	0/0	t0003	357	3	3	0	0	0	0	copy fasta	TSEN54	chr17	75511528	75529735
TSFM_chr12_57777787_57802587	1/1	t0001	1020	354	86	78	135	14	39	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	t0002	1020	6	6	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	t0003	1020	3	0	0	3	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	t0004	1020	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	t0005	1020	1	1	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	t0006	1020	1	1	0	0	0	0	copy fasta	TSFM	chr12	57777787	57802587
TSFM_chr12_57777787_57802587	0/0	t0007	1020	1	0	0	1	0	0	copy fasta	TSFM	chr12	57777787	57802587