JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSFM_chr12_57777787_57802587	0/0	t0008	1020	1	0	0	0	0	1	copy fasta	TSFM	chr12	57777787	57802587
TSG101_chr11_18475311_18531942	1/1	t0001	362	397	94	67	178	12	44	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	t0002	362	8	0	0	8	0	0	copy fasta	TSG101	chr11	18475311	18531942
TSG101_chr11_18475311_18531942	0/0	t0003	362	1	0	1	0	0	0	copy fasta	TSG101	chr11	18475311	18531942
TSGA10IP_chr11_65940480_65964966	1/1	t0001	223	390	98	72	174	8	36	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10IP_chr11_65940480_65964966	0/0	t0002	223	2	0	0	0	0	2	copy fasta	TSGA10IP	chr11	65940480	65964966
TSGA10_chr2_98992261_99159942	0/0	t0001	1807	128	21	36	54	3	14	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/1	t0002	1807	101	35	24	25	4	12	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0003	1807	63	7	7	47	1	1	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0004	1807	8	8	0	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	1/0	t0005	1807	6	0	0	0	2	3	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0006	1807	5	4	1	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0007	1807	4	0	3	1	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0008	1807	2	2	0	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0009	1807	1	1	0	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0010	1807	1	1	0	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0011	1807	1	0	0	1	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0012	1807	1	0	0	1	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0013	1807	1	0	1	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0014	1807	1	0	0	1	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA10_chr2_98992261_99159942	0/0	t0015	1807	1	1	0	0	0	0	copy fasta	TSGA10	chr2	98992261	99159942
TSGA13_chr7_130663643_130691545	0/1	t0001	806	227	22	46	108	14	36	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	1/0	t0002	806	109	35	19	43	2	9	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0003	806	20	19	1	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0004	806	7	6	0	0	0	1	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0005	806	4	4	0	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0006	806	4	3	1	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0007	806	2	2	0	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0008	806	2	2	0	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0009	806	2	1	1	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0010	806	1	0	0	1	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0011	806	1	1	0	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0012	806	1	1	0	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0013	806	1	0	1	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0014	806	1	0	0	1	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0015	806	1	0	0	1	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0016	806	1	0	1	0	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0017	806	1	0	0	1	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSGA13_chr7_130663643_130691545	0/0	t0018	806	1	0	0	1	0	0	copy fasta	TSGA13	chr7	130663643	130691545
TSHB_chr1_115024826_115039302	1/1	t0001	111	423	94	78	192	18	39	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	0/0	t0002	111	4	4	0	0	0	0	copy fasta	TSHB	chr1	115024826	115039302
TSHB_chr1_115024826_115039302	0/0	t0003	111	1	0	0	0	0	1	copy fasta	TSHB	chr1	115024826	115039302
TSHR_chr14_80950621_81151306	0/0	t0001	2015	60	19	2	35	0	4	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/1	t0002	2015	53	4	15	20	2	11	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	1/0	t0003	2014	48	18	10	14	1	4	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0004	2015	46	0	11	29	2	4	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0005	2015	31	18	3	0	1	9	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0006	2015	5	4	1	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0007	2015	4	4	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0008	2015	3	3	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306