JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSHR_chr14_80950621_81151306	0/0	t0009	2015	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0010	2015	2	0	0	0	0	2	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0011	2015	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0012	2015	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0013	2015	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0014	2015	2	2	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0015	2015	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0016	2015	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0017	2015	1	0	0	1	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0018	2015	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0019	2015	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0020	2015	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0021	2015	1	0	0	1	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHR_chr14_80950621_81151306	0/0	t0022	2015	1	1	0	0	0	0	copy fasta	TSHR	chr14	80950621	81151306
TSHZ1_chr18_75205797_75294944	0/0	t0001	2386	82	3	18	50	8	3	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/1	t0002	2385	48	8	7	18	5	9	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0003	2387	34	6	6	16	1	5	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0004	2387	17	4	3	8	0	2	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0005	2386	17	1	4	12	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0006	2388	17	5	5	4	0	3	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0007	2387	16	14	1	0	1	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0008	2384	12	9	2	0	1	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0009	2385	5	1	0	4	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0010	2385	5	0	0	0	0	5	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0011	2386	4	1	2	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0012	2384	4	3	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0013	2387	4	4	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0014	2385	3	2	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0015	2385	2	0	0	0	0	2	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0016	2387	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0017	2385	2	0	1	0	0	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0018	2385	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0019	2386	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0020	2384	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0021	2386	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0022	2388	2	0	0	2	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0023	2384	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0024	2384	2	2	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0025	2385	2	0	0	1	0	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0026	2387	1	0	0	0	0	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0027	2387	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0028	2387	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0029	2386	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0030	2385	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0031	2360	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0032	2385	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0033	2386	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0034	2386	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0035	2385	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0036	2385	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944