JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSHZ1_chr18_75205797_75294944	0/0	t0037	2385	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	1/0	t0038	2384	1	0	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0039	2385	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0040	2385	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0041	2385	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0042	2386	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0043	2385	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0044	2385	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0045	2338	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0046	2387	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0047	2386	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0048	2359	1	0	0	0	0	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0049	2386	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0050	2386	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0051	2386	1	0	0	0	0	1	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0052	2388	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0053	2387	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0054	2388	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0055	2384	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0056	2384	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0057	2383	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0058	2383	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0059	2385	1	0	1	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0060	2385	1	1	0	0	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ1_chr18_75205797_75294944	0/0	t0061	2384	1	0	0	1	0	0	copy fasta	TSHZ1	chr18	75205797	75294944
TSHZ2_chr20_52967358_53500330	0/0	t0001	9127	16	4	3	6	0	3	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0002	9132	15	1	5	5	1	3	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0003	9135	9	0	5	3	1	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0004	9131	9	1	0	3	1	4	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0005	9128	7	2	0	5	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0006	9136	7	5	1	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0007	9132	6	1	0	2	0	3	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0008	9135	4	0	1	3	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0009	9132	3	1	0	2	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0010	9132	3	3	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0011	9137	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0012	9133	2	0	0	0	0	2	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0013	9133	2	0	1	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0014	9136	2	1	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0015	9132	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0016	9132	2	1	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0017	9134	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0018	9135	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0019	9134	2	1	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0020	9132	2	0	0	2	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0021	9130	2	0	2	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0022	9128	2	2	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0023	9125	2	0	0	2	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0024	9135	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0025	9137	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330