JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSHZ2_chr20_52967358_53500330	0/0	t0026	9134	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0027	9133	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0028	9132	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0029	9125	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0030	9135	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0031	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0032	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0033	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0034	9136	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0035	9130	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0036	9120	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0037	9119	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0038	9115	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0039	9138	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0040	9135	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0041	9122	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0042	9139	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0043	9135	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0044	9135	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0045	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0046	9133	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0047	9132	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0048	9128	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0049	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0050	9134	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0051	9136	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0052	9137	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0053	9134	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0054	9137	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0055	9133	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0056	9132	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0057	9133	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0058	9135	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0059	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0060	9129	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0061	9130	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0062	9128	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0063	9133	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0064	9135	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0065	9135	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0066	9134	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0067	9133	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0068	9132	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0069	9132	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0070	9134	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0071	9133	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0072	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0073	9131	1	0	0	0	1	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0074	9132	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0075	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330