JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSHZ2_chr20_52967358_53500330	0/0	t0076	9131	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0077	9134	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0078	9134	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0079	9131	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0080	9131	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0081	9127	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0082	9129	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0083	9127	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0084	9127	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0085	9120	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0086	9127	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0087	9131	1	0	0	0	0	1	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0088	9129	1	1	0	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0089	9146	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0090	9119	1	0	1	0	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0091	9117	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ2_chr20_52967358_53500330	0/0	t0092	9115	1	0	0	1	0	0	copy fasta	TSHZ2	chr20	52967358	53500330
TSHZ3_chr19_31269945_31354436	0/1	t0001	1819	214	69	41	76	5	22	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0002	1820	106	11	16	59	4	16	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0003	1818	7	7	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0004	1818	4	0	1	0	0	3	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0005	1819	2	1	1	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0006	1819	2	2	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	1/0	t0007	1820	1	0	0	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0008	1819	1	0	1	0	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0009	1819	1	0	0	0	0	1	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0010	1819	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0011	1819	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0012	1819	1	0	0	1	0	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSHZ3_chr19_31269945_31354436	0/0	t0013	1820	1	0	0	0	1	0	copy fasta	TSHZ3	chr19	31269945	31354436
TSKS_chr19_49734760_49768306	1/1	t0001	76	418	94	76	182	16	48	copy fasta	TSKS	chr19	49734760	49768306
TSKU_chr11_76778356_76803144	1/1	t0001	1524	349	65	57	167	16	42	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0002	1524	23	3	0	20	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0003	1524	21	16	5	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0004	1524	9	2	5	0	2	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0005	1524	8	6	2	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0006	1524	5	0	2	3	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0007	1524	3	3	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0008	1524	2	0	2	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0009	1524	2	2	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0010	1524	1	0	0	1	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0011	1524	1	0	0	1	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0012	1524	1	1	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0013	1524	1	0	1	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0014	1524	1	1	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0015	1524	1	1	0	0	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0016	1524	1	0	0	1	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSKU_chr11_76778356_76803144	0/0	t0017	1524	1	0	0	1	0	0	copy fasta	TSKU	chr11	76778356	76803144
TSLP_chr5_111066713_111083026	1/0	t0001	2131	257	35	36	156	11	18	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/1	t0002	2131	106	6	24	57	3	15	copy fasta	TSLP	chr5	111066713	111083026