JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSLP_chr5_111066713_111083026	0/0	t0003	2131	38	9	8	7	2	12	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0004	2131	11	9	2	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0005	2131	10	8	2	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0006	2131	9	9	0	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0007	2131	8	8	0	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0008	2131	5	0	0	5	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0009	2131	4	4	0	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0010	2131	4	3	1	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0011	2131	3	3	0	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0012	2131	2	2	0	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0013	2131	2	0	2	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0014	2131	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0015	2131	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0016	2131	1	0	1	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0017	2131	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0018	2131	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0019	2131	1	1	0	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0020	2131	1	1	0	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0021	2131	1	0	1	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0022	2131	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0023	2131	1	0	0	0	0	1	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0024	2131	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0025	2131	1	0	1	0	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSLP_chr5_111066713_111083026	0/0	t0026	2131	1	0	0	1	0	0	copy fasta	TSLP	chr5	111066713	111083026
TSNARE1_chr8_142207080_142408182	0/1	t0001	364	139	55	31	24	8	20	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	t0002	364	70	14	7	45	0	4	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	1/0	t0003	364	22	0	10	8	0	3	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	t0004	364	3	0	0	3	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	t0005	364	2	0	1	0	0	1	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	t0006	364	1	1	0	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNARE1_chr8_142207080_142408182	0/0	t0007	364	1	0	1	0	0	0	copy fasta	TSNARE1	chr8	142207080	142408182
TSNAXIP1_chr16_67801889_67833068	1/1	t0001	337	236	73	47	78	6	30	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	t0002	337	19	17	0	0	0	2	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAXIP1_chr16_67801889_67833068	0/0	t0003	337	1	0	1	0	0	0	copy fasta	TSNAXIP1	chr16	67801889	67833068
TSNAX_chr1_231523669_231571524	1/1	t0001	1762	360	76	57	166	18	41	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0002	1762	6	0	2	1	0	3	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0003	1762	4	4	0	0	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0004	1762	4	4	0	0	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0005	1762	4	3	1	0	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0006	1762	3	0	0	3	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0007	1762	2	0	0	2	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0008	1762	2	2	0	0	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0009	1762	1	0	0	0	0	1	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0010	1762	1	0	0	0	0	1	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0011	1762	1	0	0	1	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0012	1762	1	1	0	0	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0013	1762	1	0	0	1	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0014	1749	1	0	0	1	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSNAX_chr1_231523669_231571524	0/0	t0015	1762	1	0	0	1	0	0	copy fasta	TSNAX	chr1	231523669	231571524
TSN_chr2_121750651_121772853	1/1	t0001	2616	306	53	60	143	14	34	copy fasta	TSN	chr2	121750651	121772853