JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSN_chr2_121750651_121772853	0/0	t0002	2616	21	12	3	6	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0003	2616	15	0	0	15	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0004	2620	11	11	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0005	2616	5	0	0	5	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0006	2616	4	4	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0007	2616	3	3	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0008	2617	3	2	1	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0009	2612	3	2	1	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0010	2616	2	0	0	2	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0011	2616	2	2	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0012	2616	2	2	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0013	2638	2	0	0	0	0	2	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0014	2616	1	0	0	1	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0015	2616	1	0	0	0	0	1	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0016	2616	1	0	0	1	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0017	2616	1	1	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0018	2616	1	1	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0019	2616	1	0	1	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0020	2616	1	0	0	1	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0021	2616	1	1	0	0	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0022	2616	1	0	0	1	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0023	2616	1	0	0	1	0	0	copy fasta	TSN	chr2	121750651	121772853
TSN_chr2_121750651_121772853	0/0	t0024	2616	1	0	0	0	0	1	copy fasta	TSN	chr2	121750651	121772853
TSPAN10_chr17_81632196_81653749	0/0	t0001	773	247	51	46	120	7	23	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0002	773	84	8	11	49	5	11	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	1/0	t0003	773	37	9	16	0	3	8	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/1	t0004	773	32	20	4	0	3	4	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0005	773	2	0	2	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0006	773	2	0	0	2	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0007	773	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0008	773	1	0	1	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0009	773	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0010	773	1	0	0	1	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0011	773	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN10_chr17_81632196_81653749	0/0	t0012	773	1	1	0	0	0	0	copy fasta	TSPAN10	chr17	81632196	81653749
TSPAN11_chr12_30921748_31001599	0/0	t0001	4744	71	6	3	54	1	7	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/1	t0002	4748	46	7	21	4	3	10	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0003	4744	29	0	0	27	0	2	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0004	4748	23	13	9	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0005	4744	21	0	5	8	1	7	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0006	4744	19	2	0	16	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0007	4744	18	0	0	17	1	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0008	4744	14	0	0	14	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0009	4748	11	2	8	0	1	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0010	4745	10	3	5	0	1	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0011	4744	9	0	6	3	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0012	4744	8	0	0	8	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0013	4744	7	7	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0014	4745	5	3	2	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0015	4748	5	4	1	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599