JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN11_chr12_30921748_31001599	0/0	t0016	4746	5	5	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0017	4741	5	0	3	0	0	2	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0018	4747	5	5	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0019	4744	4	4	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0020	4744	3	1	2	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0021	4744	3	3	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0022	4744	3	3	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0023	4745	3	0	1	0	2	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0024	4744	3	2	1	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0025	4744	3	0	1	0	0	2	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0026	4744	3	3	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0027	4744	2	0	0	0	0	2	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0028	4749	2	2	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0029	4745	2	2	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0030	4748	2	0	1	0	1	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0031	4749	2	0	2	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0032	4744	2	0	0	1	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0033	4744	2	0	0	2	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0034	4744	2	2	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0035	4748	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0036	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0037	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0038	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0039	4748	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0040	4748	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0041	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0042	4748	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0043	4748	1	0	0	0	1	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0044	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0045	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0046	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0047	4746	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0048	4744	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0049	4748	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0050	4748	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0051	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0052	4745	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0053	4741	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	1/0	t0054	4745	1	0	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0055	4748	1	0	1	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0056	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0057	4748	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0058	4748	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0059	4748	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0060	4744	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0061	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0062	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0063	4748	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0064	4749	1	0	1	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0065	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599