JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN11_chr12_30921748_31001599	0/0	t0066	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0067	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0068	4748	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0069	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0070	4744	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0071	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0072	4748	1	0	1	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0073	4744	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0074	4744	1	0	0	0	0	1	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0075	4744	1	0	0	1	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN11_chr12_30921748_31001599	0/0	t0076	4747	1	1	0	0	0	0	copy fasta	TSPAN11	chr12	30921748	31001599
TSPAN12_chr7_120782320_120863144	0/1	t0001	1668	168	63	28	65	1	10	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0002	1669	73	4	14	48	0	7	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	1/0	t0003	1668	29	15	7	2	0	4	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0004	1669	8	2	5	0	1	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0005	1668	7	0	0	7	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0006	1668	2	2	0	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0007	1668	1	1	0	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0008	1668	1	0	0	1	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0009	1668	1	1	0	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0010	1668	1	1	0	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0011	1668	1	0	0	0	0	1	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0012	1668	1	1	0	0	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN12_chr7_120782320_120863144	0/0	t0013	1669	1	0	0	1	0	0	copy fasta	TSPAN12	chr7	120782320	120863144
TSPAN13_chr7_16748755_16789536	0/1	t0001	1260	202	15	44	106	5	31	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0002	1257	73	15	19	26	5	8	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0003	1259	39	7	1	29	0	2	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	1/0	t0004	1259	38	12	4	18	1	2	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0005	1260	18	5	3	6	0	4	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0006	1256	16	9	0	7	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0007	1260	9	4	3	2	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0008	1257	7	7	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0009	1260	6	5	1	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0010	1257	5	4	1	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0011	1260	4	4	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0012	1256	3	1	0	0	2	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0013	1259	2	0	2	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0014	1260	2	2	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0015	1257	2	1	1	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0016	1259	1	0	0	0	0	1	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0017	1260	1	1	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0018	1260	1	1	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0019	1260	1	0	1	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0020	1260	1	0	1	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0021	1260	1	0	0	0	1	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0022	1257	1	0	1	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0023	1257	1	0	0	1	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0024	1257	1	1	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0025	1257	1	0	0	1	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0026	1257	1	1	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536