Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTRC_chr10_101349165_101562313	0/0	t0008	4206	6	6	0	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0009	4207	3	0	0	3	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0010	4207	1	0	0	0	0	1	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0011	4207	1	0	1	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0012	4207	1	1	0	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0013	4207	1	1	0	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0014	4207	1	1	0	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0015	4207	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0016	4207	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0017	4207	1	0	1	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0018	4207	1	1	0	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0019	4207	1	0	0	0	0	1	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0020	4207	1	0	1	0	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0021	4207	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BTRC_chr10_101349165_101562313	0/0	t0022	4198	1	0	0	1	0	0	copy fasta	BTRC	chr10	101349165	101562313
BUB1B_chr15_40156069_40226123	0/0	t0001	517	185	39	28	81	10	27	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	1/1	t0002	517	124	16	24	69	2	11	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	t0003	517	39	36	3	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	t0004	517	2	1	1	0	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	t0005	517	1	0	0	1	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1B_chr15_40156069_40226123	0/0	t0006	517	1	0	0	1	0	0	copy fasta	BUB1B	chr15	40156069	40226123
BUB1_chr2_110632528_110683063	0/0	t0001	509	48	17	6	17	0	8	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0002	507	39	11	13	14	0	1	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0003	511	22	15	3	1	0	3	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	1/0	t0004	505	17	6	2	4	0	4	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0005	515	11	4	0	6	0	1	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0006	513	9	4	2	3	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0007	507	9	0	8	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0008	503	7	4	2	0	0	1	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/1	t0009	517	3	0	0	0	2	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0010	509	3	0	0	3	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0011	499	3	3	0	0	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0012	510	3	0	2	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0013	509	2	1	1	0	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0014	523	1	1	0	0	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0015	509	1	0	1	0	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0016	520	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0017	518	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0018	516	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB1_chr2_110632528_110683063	0/0	t0019	513	1	0	0	1	0	0	copy fasta	BUB1	chr2	110632528	110683063
BUB3_chr10_123149402_123175467	1/0	t0001	6717	135	7	23	83	8	13	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0002	6716	52	21	12	13	1	5	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0003	6715	38	0	2	36	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0004	6715	30	1	1	20	1	7	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0005	6716	14	4	2	7	0	1	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0006	6717	11	0	3	8	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0007	6716	7	4	1	0	0	2	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0008	6717	7	0	5	0	2	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0009	6717	6	0	0	2	0	4	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0010	6718	6	0	3	0	0	3	copy fasta	BUB3	chr10	123149402	123175467