JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN13_chr7_16748755_16789536	0/0	t0027	1257	1	0	0	1	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0028	1257	1	0	0	1	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN13_chr7_16748755_16789536	0/0	t0029	1257	1	1	0	0	0	0	copy fasta	TSPAN13	chr7	16748755	16789536
TSPAN14_chr10_80449310_80527631	0/0	t0001	4739	46	2	16	18	2	8	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0002	4739	33	18	6	1	1	7	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/1	t0003	4735	18	2	10	1	3	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0004	4741	16	0	1	12	0	3	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0005	4741	11	9	2	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0006	4739	10	6	2	0	0	2	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0007	4741	8	3	1	1	0	3	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0008	4740	8	1	4	2	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0009	4740	7	3	1	0	0	3	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0010	4739	6	0	4	0	1	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0011	4738	6	0	2	0	2	2	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0012	4740	6	5	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0013	4739	4	3	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0014	4740	4	4	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0015	4740	4	0	1	2	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0016	4739	4	4	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0017	4746	4	4	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0018	4739	3	3	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0019	4739	3	3	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0020	4739	3	0	2	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0021	4740	3	3	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0022	4740	3	3	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0023	4740	2	2	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0024	4739	2	2	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0025	4738	2	0	0	0	2	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0026	4738	2	0	0	2	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0027	4739	2	1	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0028	4738	2	0	0	2	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0029	4739	2	0	2	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0030	4739	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0031	4738	1	0	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0032	4740	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0033	4739	1	0	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0034	4738	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0035	4739	1	0	0	1	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0036	4740	1	0	0	1	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0037	4740	1	0	0	1	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0038	4740	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0039	4741	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0040	4741	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	1/0	t0041	4735	1	0	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0042	4735	1	0	0	0	1	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0043	4738	1	0	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0044	4738	1	0	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0045	4740	1	0	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0046	4739	1	0	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0047	4738	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631