JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN14_chr10_80449310_80527631	0/0	t0048	4739	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0049	4739	1	0	0	1	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0050	4739	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0051	4740	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0052	4739	1	0	0	0	0	1	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0053	4738	1	0	1	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0054	4742	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0055	4739	1	0	0	1	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0056	4739	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN14_chr10_80449310_80527631	0/0	t0057	4734	1	1	0	0	0	0	copy fasta	TSPAN14	chr10	80449310	80527631
TSPAN15_chr10_69446465_69512666	0/0	t0001	818	95	16	15	41	6	17	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0002	817	70	49	13	1	1	6	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	1/0	t0003	819	59	5	11	35	3	4	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0004	819	43	1	12	23	5	2	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0005	819	17	1	7	3	0	6	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/1	t0006	820	12	3	1	2	0	5	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0007	820	6	2	0	4	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0008	818	6	5	1	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0009	819	5	5	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0010	819	4	1	2	0	1	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0011	820	4	0	0	3	0	1	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0012	820	3	0	0	2	0	1	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0013	818	2	0	0	2	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0014	817	2	0	1	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0015	819	2	2	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0016	819	1	1	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0017	819	1	0	0	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0018	818	1	1	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0019	818	1	0	0	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0020	817	1	1	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0021	819	1	0	1	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0022	819	1	0	0	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0023	818	1	1	0	0	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0024	820	1	0	0	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN15_chr10_69446465_69512666	0/0	t0025	819	1	0	0	1	0	0	copy fasta	TSPAN15	chr10	69446465	69512666
TSPAN16_chr19_11291160_11320967	0/0	t0001	268	123	34	23	50	6	10	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	t0002	268	112	11	20	71	4	6	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	1/0	t0003	268	83	2	21	43	7	9	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	t0004	268	38	36	1	1	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/1	t0005	268	23	11	2	3	1	5	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	t0006	268	2	0	1	1	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN16_chr19_11291160_11320967	0/0	t0007	268	1	0	0	1	0	0	copy fasta	TSPAN16	chr19	11291160	11320967
TSPAN17_chr5_176642484_176664051	0/1	t0001	1486	203	29	58	78	10	27	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0002	1486	134	12	13	89	6	14	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0003	1486	13	9	3	0	1	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	1/0	t0004	1486	12	11	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0005	1486	12	12	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0006	1486	9	6	3	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0007	1486	7	7	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0008	1486	5	4	1	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051