JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN17_chr5_176642484_176664051	0/0	t0009	1486	3	0	0	3	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0010	1486	2	2	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0011	1486	1	1	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0012	1486	1	1	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0013	1486	1	0	0	1	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0014	1486	1	0	0	1	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0015	1486	1	0	0	1	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0016	1486	1	0	0	1	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0017	1486	1	1	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0018	1486	1	1	0	0	0	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0019	1486	1	0	0	0	0	1	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN17_chr5_176642484_176664051	0/0	t0020	1475	1	0	0	0	1	0	copy fasta	TSPAN17	chr5	176642484	176664051
TSPAN18_chr11_44721962_44937423	0/0	t0001	3793	33	0	11	9	4	9	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0002	3793	29	0	5	20	0	4	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0003	3794	19	4	8	0	4	3	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0004	3793	10	0	3	6	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/1	t0005	3793	8	0	3	3	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0006	3793	8	2	4	0	0	2	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0007	3793	7	0	0	5	0	2	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0008	3793	7	0	1	4	0	2	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0009	3794	6	1	3	0	2	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0010	3793	5	0	3	2	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0011	3799	5	0	1	4	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0012	3794	5	1	0	0	3	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0013	3793	4	0	3	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0014	3799	4	0	0	4	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0015	3794	4	1	2	0	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0016	3794	4	2	2	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0017	3790	4	4	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0018	3794	3	0	2	0	1	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0019	3793	3	0	1	2	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0020	3793	3	2	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0021	3793	3	0	1	1	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0022	3793	3	0	2	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0023	3793	3	3	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0024	3790	3	3	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0025	3794	2	0	0	0	1	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0026	3793	2	0	0	2	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0027	3793	2	0	0	2	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0028	3799	2	0	0	2	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0029	3794	2	1	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0030	3793	2	1	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0031	3793	2	0	0	1	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0032	3793	2	1	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0033	3793	2	2	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0034	3793	2	0	0	2	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0035	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0036	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0037	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0038	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423