JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN18_chr11_44721962_44937423	0/0	t0039	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0040	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0041	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0042	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0043	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0044	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0045	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0046	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0047	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0048	3793	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0049	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0050	3794	1	0	0	0	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0051	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0052	3812	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	1/0	t0053	3811	1	0	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0054	3811	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0055	3799	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0056	3799	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0057	3799	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0058	3799	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0059	3799	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0060	3799	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0061	3796	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0062	3799	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0063	3799	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0064	3796	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0065	3800	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0066	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0067	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0068	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0069	3790	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0070	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0071	3793	1	0	0	0	1	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0072	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0073	3790	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0074	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0075	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0076	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0077	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0078	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0079	3794	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0080	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0081	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0082	3790	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0083	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0084	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0085	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0086	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0087	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0088	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423