JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN18_chr11_44721962_44937423	0/0	t0089	3790	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0090	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0091	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0092	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0093	3794	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0094	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0095	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0096	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0097	3808	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0098	3811	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0099	3811	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0100	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0101	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0102	3790	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0103	3793	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0104	3794	1	0	0	0	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0105	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0106	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0107	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0108	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0109	3794	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0110	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0111	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0112	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0113	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0114	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0115	3793	1	0	0	0	0	1	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0116	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0117	3793	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0118	3794	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0119	3793	1	1	0	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0120	3794	1	0	1	0	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN18_chr11_44721962_44937423	0/0	t0121	3799	1	0	0	1	0	0	copy fasta	TSPAN18	chr11	44721962	44937423
TSPAN19_chr12_85009317_85041277	0/1	t0001	272	216	77	43	72	8	15	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN19_chr12_85009317_85041277	1/0	t0002	272	133	10	25	70	6	21	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN19_chr12_85009317_85041277	0/0	t0003	272	1	1	0	0	0	0	copy fasta	TSPAN19	chr12	85009317	85041277
TSPAN1_chr1_46170087_46190962	1/1	t0001	894	424	92	75	191	18	46	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	t0002	894	9	8	1	0	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	t0003	894	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	t0004	894	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN1_chr1_46170087_46190962	0/0	t0005	908	1	0	0	1	0	0	copy fasta	TSPAN1	chr1	46170087	46190962
TSPAN2_chr1_115043011_115094503	0/0	t0001	2557	123	14	19	66	8	16	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0002	2555	96	5	17	65	1	8	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/1	t0003	2553	31	5	15	0	3	7	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0004	2557	27	20	3	0	0	4	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0005	2557	11	10	1	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0006	2557	8	8	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0007	2559	7	0	0	7	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	1/0	t0008	2551	6	4	0	0	1	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0009	2555	6	6	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503