JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN2_chr1_115043011_115094503	0/0	t0010	2552	5	0	2	3	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0011	2555	4	4	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0012	2553	4	0	1	0	3	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0013	2557	4	4	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0014	2555	4	0	0	4	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0015	2559	3	3	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0016	2555	2	0	2	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0017	2552	2	0	0	2	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0018	2551	2	2	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0019	2557	2	2	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0020	2557	2	2	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0021	2557	2	0	0	2	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0022	2553	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0023	2544	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0024	2557	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0025	2555	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0026	2555	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0027	2555	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0028	2555	1	0	0	1	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0029	2557	1	1	0	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0030	2557	1	0	0	0	0	1	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0031	2557	1	0	1	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN2_chr1_115043011_115094503	0/0	t0032	2553	1	0	1	0	0	0	copy fasta	TSPAN2	chr1	115043011	115094503
TSPAN31_chr12_57740039_57755219	0/0	t0001	3034	108	1	20	68	4	15	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0002	3042	60	16	17	18	5	4	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/1	t0003	3042	45	2	12	18	4	8	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	1/0	t0004	3046	32	11	7	13	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0005	3040	13	12	1	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0006	3046	12	11	1	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0007	3034	10	6	1	0	2	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0008	3046	9	7	2	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0009	3042	8	1	0	5	0	2	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0010	3042	6	0	4	0	2	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0011	3047	5	5	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0012	3042	4	0	3	0	0	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0013	3040	3	3	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0014	3034	3	1	2	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0015	3035	3	0	0	3	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0016	3043	3	0	3	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0017	3051	3	0	0	0	0	3	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0018	3037	2	2	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0019	3034	2	0	0	2	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0020	3026	2	0	0	2	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0021	3038	2	0	0	1	0	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0022	3050	2	1	1	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0023	3047	2	0	0	0	0	2	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0024	3045	2	2	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0025	3046	2	0	2	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0026	3050	2	2	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0027	3038	2	0	0	2	0	0	copy fasta	TSPAN31	chr12	57740039	57755219