JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN31_chr12_57740039_57755219	0/0	t0028	3041	2	0	0	2	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0029	3034	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0030	3034	1	0	0	0	0	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0031	3042	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0032	3035	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0033	3047	1	1	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0034	3042	1	1	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0035	3034	1	0	0	0	0	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0036	3042	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0037	3034	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0038	3038	1	0	1	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0039	3030	1	1	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0040	3046	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0041	3034	1	1	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0042	3042	1	0	0	0	1	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0043	3046	1	0	1	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0044	3046	1	0	0	0	0	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0045	3042	1	0	0	0	0	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0046	3051	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0047	3033	1	0	0	1	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0048	3042	1	0	0	0	0	1	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0049	3046	1	1	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0050	3046	1	1	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN31_chr12_57740039_57755219	0/0	t0051	3034	1	1	0	0	0	0	copy fasta	TSPAN31	chr12	57740039	57755219
TSPAN32_chr11_2297013_2323204	1/1	t0001	418	406	92	78	175	14	45	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	t0002	418	4	4	0	0	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	t0003	418	1	0	0	1	0	0	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN32_chr11_2297013_2323204	0/0	t0004	418	1	0	0	0	0	1	copy fasta	TSPAN32	chr11	2297013	2323204
TSPAN33_chr7_129139707_129174699	1/0	t0001	2100	121	45	32	26	6	11	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/1	t0002	2100	76	4	12	40	5	14	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0003	2100	75	0	2	70	0	3	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0004	2102	43	8	8	24	0	3	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0005	2122	42	2	5	24	2	9	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0006	2122	16	5	5	0	3	3	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0007	2122	7	6	1	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0008	2100	7	6	1	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0009	2100	6	0	0	6	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0010	2100	5	0	0	5	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0011	2122	4	4	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0012	2100	3	2	1	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0013	2100	3	3	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0014	2122	2	0	0	2	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0015	2100	2	0	0	0	0	2	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0016	2100	2	0	0	2	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0017	2090	2	2	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0018	2100	2	0	0	2	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0019	2100	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0020	2122	1	0	0	1	0	0	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0021	2122	1	0	0	0	0	1	copy fasta	TSPAN33	chr7	129139707	129174699
TSPAN33_chr7_129139707_129174699	0/0	t0022	2122	1	1	0	0	0	0	copy fasta	TSPAN33	chr7	129139707	129174699