JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN6_chrX_100622108_100641806	0/0	t0001	3031	150	19	28	88	1	14	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	1/1	t0002	3031	131	40	28	36	7	18	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0003	3031	6	6	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0004	3031	4	0	0	4	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0005	3032	3	3	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0006	3032	3	0	1	2	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0007	3031	2	2	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0008	3031	2	2	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0009	3031	1	1	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0010	3031	1	1	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0011	3031	1	0	1	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0012	3031	1	0	0	1	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0013	3027	1	0	0	1	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0014	3031	1	0	0	0	1	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0015	3031	1	1	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0016	3030	1	0	0	1	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0017	3031	1	1	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0018	3031	1	0	1	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0019	3027	1	0	0	1	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0020	3031	1	0	1	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0021	3030	1	0	1	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0022	3031	1	1	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0023	3031	1	0	1	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0024	3031	1	0	1	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN6_chrX_100622108_100641806	0/0	t0025	3031	1	1	0	0	0	0	copy fasta	TSPAN6	chrX	100622108	100641806
TSPAN7_chrX_38556542_38693918	0/1	t0001	993	171	45	29	72	6	18	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	1/0	t0002	993	47	14	7	16	3	6	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	0/0	t0003	993	3	3	0	0	0	0	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	0/0	t0004	993	1	1	0	0	0	0	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN7_chrX_38556542_38693918	0/0	t0005	993	1	1	0	0	0	0	copy fasta	TSPAN7	chrX	38556542	38693918
TSPAN8_chr12_71120096_71162999	1/1	t0001	418	300	78	48	132	9	31	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	t0002	418	102	13	14	53	7	15	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	t0003	418	8	7	1	0	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	t0004	418	2	1	1	0	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	t0005	418	1	1	0	0	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN8_chr12_71120096_71162999	0/0	t0006	418	1	0	0	1	0	0	copy fasta	TSPAN8	chr12	71120096	71162999
TSPAN9_chr12_3072379_3291559	0/0	t0001	3600	36	2	11	13	3	7	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0002	3600	15	2	7	1	2	3	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0003	3603	14	5	0	9	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0004	3600	14	1	2	11	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0005	3603	12	0	3	5	2	2	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0006	3600	12	0	1	11	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0007	3600	10	1	3	2	1	3	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0008	3603	8	1	3	3	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0009	3603	8	4	0	4	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/1	t0010	3603	8	2	5	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0011	3600	6	2	0	2	1	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0012	3603	5	2	0	3	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0013	3599	5	0	0	5	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0014	3600	5	0	2	0	1	2	copy fasta	TSPAN9	chr12	3072379	3291559