JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN9_chr12_3072379_3291559	0/0	t0015	3603	4	4	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0016	3603	4	4	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0017	3603	4	4	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0018	3603	3	3	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0019	3600	3	2	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0020	3599	3	0	0	3	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0021	3600	3	0	0	1	0	2	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0022	3600	3	3	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0023	3603	2	2	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0024	3603	2	2	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	1/0	t0025	3603	2	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0026	3602	2	0	0	2	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0027	3603	2	2	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0028	3603	2	2	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0029	3603	2	2	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0030	3605	2	1	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0031	3603	2	2	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0032	3603	2	1	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0033	3603	2	0	2	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0034	3600	2	0	2	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0035	3600	2	0	1	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0036	3600	2	0	0	0	2	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0037	3600	2	1	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0038	3600	2	2	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0039	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0040	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0041	3603	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0042	3603	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0043	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0044	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0045	3603	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0046	3603	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0047	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0048	3603	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0049	3602	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0050	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0051	3603	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0052	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0053	3603	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0054	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0055	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0056	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0057	3603	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0058	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0059	3603	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0060	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0061	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0062	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0063	3602	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0064	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559