JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPAN9_chr12_3072379_3291559	0/0	t0065	3605	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0066	3602	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0067	3603	1	0	0	0	1	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0068	3603	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0069	3603	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0070	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0071	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0072	3603	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0073	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0074	3603	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0075	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0076	3600	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0077	3600	1	0	0	0	1	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0078	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0079	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0080	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0081	3600	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0082	3599	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0083	3599	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0084	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0085	3600	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0086	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0087	3600	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0088	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0089	3600	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0090	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0091	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0092	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0093	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0094	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0095	3600	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0096	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0097	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0098	3600	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0099	3600	1	0	1	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0100	3599	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0101	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0102	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0103	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0104	3600	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0105	3600	1	0	0	0	0	1	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0106	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0107	3600	1	0	0	1	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0108	3600	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPAN9_chr12_3072379_3291559	0/0	t0109	3602	1	1	0	0	0	0	copy fasta	TSPAN9	chr12	3072379	3291559
TSPEAR_chr21_44492893_44716572	1/1	t0001	1949	216	48	53	74	10	29	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0002	1949	16	0	0	13	0	3	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0003	1949	15	14	1	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0004	1949	7	5	2	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0005	1948	7	7	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572