JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPEAR_chr21_44492893_44716572	0/0	t0006	1949	5	0	1	4	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0007	1946	4	4	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0008	1947	3	3	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0009	1949	3	1	0	2	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0010	1949	2	2	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0011	1949	2	0	0	2	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0012	1949	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0013	1949	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0014	1949	1	0	1	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0015	1949	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0016	1949	1	0	0	0	0	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0017	1949	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0018	1949	1	0	1	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0019	1948	1	0	1	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0020	1949	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0021	1949	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0022	1949	1	0	0	0	0	1	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0023	1949	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0024	1949	1	1	0	0	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPEAR_chr21_44492893_44716572	0/0	t0025	1239	1	0	0	1	0	0	copy fasta	TSPEAR	chr21	44492893	44716572
TSPO2_chr6_41037467_41049337	0/1	t0001	533	219	56	47	85	9	21	copy fasta	TSPO2	chr6	41037467	41049337
TSPO2_chr6_41037467_41049337	0/0	t0002	533	127	32	22	53	3	17	copy fasta	TSPO2	chr6	41037467	41049337
TSPO2_chr6_41037467_41049337	0/0	t0003	533	5	5	0	0	0	0	copy fasta	TSPO2	chr6	41037467	41049337
TSPO2_chr6_41037467_41049337	0/0	t0004	533	4	3	1	0	0	0	copy fasta	TSPO2	chr6	41037467	41049337
TSPO2_chr6_41037467_41049337	0/0	t0005	533	4	0	0	4	0	0	copy fasta	TSPO2	chr6	41037467	41049337
TSPO2_chr6_41037467_41049337	1/0	t0006	533	1	0	0	0	0	0	copy fasta	TSPO2	chr6	41037467	41049337
TSPOAP1_chr17_58296231_58333795	1/1	t0001	2125	288	64	38	138	10	36	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0002	2125	20	3	11	0	5	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0003	2125	6	6	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0004	2125	4	0	3	0	1	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0005	2125	4	4	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0006	2125	3	3	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0007	2125	2	0	1	0	0	1	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0008	2125	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0009	2125	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0010	2125	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0011	2125	2	2	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0012	2125	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0013	2125	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0014	2125	1	0	0	1	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0015	2125	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0016	2125	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0017	2125	1	0	1	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPOAP1_chr17_58296231_58333795	0/0	t0018	2125	1	1	0	0	0	0	copy fasta	TSPOAP1	chr17	58296231	58333795
TSPO_chr22_43146559_43168242	1/0	t0001	327	287	64	60	122	12	28	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/1	t0002	327	97	20	14	43	4	15	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	t0003	327	10	10	0	0	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	t0004	327	4	0	0	4	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	t0005	327	1	0	0	1	0	0	copy fasta	TSPO	chr22	43146559	43168242
TSPO_chr22_43146559_43168242	0/0	t0006	327	1	0	0	0	0	1	copy fasta	TSPO	chr22	43146559	43168242