JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPYL1_chr6_116269858_116284930	0/0	t0040	3760	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0041	3758	1	0	0	0	0	1	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0042	3758	1	0	0	0	0	1	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0043	3761	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0044	3760	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0045	3759	1	0	0	0	1	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0046	3760	1	0	1	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0047	3762	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0048	3760	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0049	3760	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0050	3761	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0051	3760	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0052	3762	1	0	0	0	1	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0053	3763	1	0	0	0	0	1	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0054	3760	1	0	1	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0055	3761	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0056	3762	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0057	3760	1	0	0	1	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL1_chr6_116269858_116284930	0/0	t0058	3758	1	1	0	0	0	0	copy fasta	TSPYL1	chr6	116269858	116284930
TSPYL2_chrX_53077367_53093540	1/1	t0001	734	218	61	35	92	8	20	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0002	722	16	0	1	13	2	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0003	734	8	7	1	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0004	734	3	3	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0005	734	2	2	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0006	733	2	0	0	0	1	1	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0007	735	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0008	735	1	0	1	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0009	736	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0010	734	1	0	0	0	0	1	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0011	734	1	1	0	0	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0012	734	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0013	733	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0014	731	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL2_chrX_53077367_53093540	0/0	t0015	736	1	0	0	1	0	0	copy fasta	TSPYL2	chrX	53077367	53093540
TSPYL4_chr6_116244964_116259075	0/0	t0001	2868	164	14	21	99	8	22	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/1	t0002	2868	113	24	18	58	3	9	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0003	2868	43	33	5	4	0	1	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	1/0	t0004	2868	32	3	20	0	5	3	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0005	2868	23	8	2	9	1	3	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0006	2868	7	6	1	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0007	2865	3	0	0	3	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0008	2868	2	2	0	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0009	2868	2	0	0	2	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0010	2868	2	0	0	2	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0011	2868	1	0	0	0	1	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0012	2868	1	0	1	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0013	2868	1	1	0	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0014	2868	1	0	0	1	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0015	2868	1	1	0	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0016	2868	1	1	0	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075